Its mostly a VW thing. Their autos have been crap since the mid 90's. Before that, they weren't too bad. My FIL had a '91 Vanagon with 260k+ on the original auto...and it was leaking trans fluid for 60k or more. Sturdy thing. It was only a 3-speed so it kind of sucked in that regard, but all in all, it wasn't bad.
Now, the autos are just junk. They tend to fail around 100-150k. 2.0L cars tend to have them last longer and I think there are a few around with 200k+ on them, but they are in a minority. And the rediculous cost that VW wants for auto transmissions are rediculous. I wouldn't say a failed transmission is "just an expense in owning a car". The 5-speeds are much more robust and last a lot longer.
Now, it could be worse. Honda had some serious issues with their autos in their V6 Accords in the '98-'02 gen. Some failed as early as 30k. 60k seems to be about the norm. Even after replacement, they'd fail again around a similar mileage. My hubby is lucky and has the 4-cyl car...almost 170k on his with the auto.
Keeping up with fluid changes are good, but sometimes they don't stop anything. I would just really avoid the auto at all costs.
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The Baby: Darla, 102k, '99 New Beetle GL 5-speed. Bone stock. Acquired 4/6/05. Gave her life for me 8/17/11. RIP
The Project: Klaus, 180k+, '84 Jetta GL Turbo Diesel. Rebuilt and bringing 50+ mpg. Slightly improved from stock  Acquired 7/12/08
The Baby Brother: Günther, 20th Anniversary Edition GTI
The money saver: 2001 Jetta TDI GL. 114k. Dead auto, swapped to 3 pedals. Hubby's DD and our trip car
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